Population structure of the Atlantic seabob shrimp Xiphopenaeus kroyeri (Heller, 1862) based on geometric morphometrics / Estructura de la población del camarón langostino del atlántico Xiphopenaeus kroyeri (Heller, 1862) basada en morfometría geométrica

SUMMARY: In 2004, Xiphopenaeus kroyeri, one of major species in commercial fisheries in Brazil was included in the list of brazilian overfished species and, in 2006, two cryptic species were identified in the Atlantic Ocean by molecular approaches: Xiphopenaeus sp. I and II. In 2019, Carvalho-Batista et al. described both Xiphopenaeus sp. I and Xiphopenaeus sp. II and these species were named X. kroyeri and X. dincao, respectively. This study aimed at performing morphometric analysis in order to identify potential fishing stocks of X. kroyeri sensu strictum along Brazilian coast. The results obtained separate Caravelas, Atafona and Balneário Camboriú from all the other populations studied and showed three groups: Ubatuba, Nova Almeida; Ubatuba, Cananéia; Ubatuba, Santos. These results indicate that the maritime limits practiced in closed seasons along Brazil are embracing the detected morphometric stock boundaries observed for Xiphopenaeus kroyeris.s.

RESUMEN: En 2004, Xiphopenaeus kroyeri, una de las principales especies de la pesca comercial en Brasil, fue incluida en la lista de especies brasileñas sobre explotadas y, en 2006, se identificaron dos especies crípticas en el Océano Atlántico mediante enfoques moleculares: Xiphopenaeus sp. I y II. En 2019, Carvalho-Batista et al. describieron tanto Xiphopenaeus sp. I y Xiphopenaeus sp. II y a estas especies denominaron X. kroyeri y X. dincao, respectivamente. Este estudio tuvo como objetivo realizar un análisis morfométrico con el fin de identificar posibles poblaciones de pesca de X. kroyeri sensu strictum a lo largo de la costa brasileña. Los resultados obtenidos en Caravelas, Atafona y Balneário Camboriú se separaron de todas las demás poblaciones estudiadas y mostraron tres grupos: Ubatuba, Nova Almeida; Ubatuba, Cananéia; Ubatuba, Santos. Estos resultados indican que los límites marítimos practicados en temporadas de veda a lo largo de Brasil están abarcando los límites de stock morfométricos observados para Xiphopenaeus kroyeris.s.

Floristic composition, structure and environmental characterization of Cyathea costaricensis population in a remnant cloud forest in Mexico / Composición florística, estructura y caracterización ambiental de una población de Cyathea costaricensis en un relicto de bosque mesófilo de montaña en México

Abstract Introduction: Tree ferns are significant components of temperate, tropical and subtropical forests, contributing to shape complex forest stand structures. Objectives: 1) to describe the population structure of Cyathea costaricensis in a remnant cloud forest of West-central Mexico; 2) to characterize and relate the floristic composition and the structure of the most important tree species associated to the C. costaricensis population and; 3) to describe the environment where C. costaricensis occurs. Methods: We estimated the Importance Value Index (IVI) to select the most important canopy-dominant species associated to C. costaricensis; we constructed height and Diameter at Breast Height (DBH) frequency distributions for those selected species according to IVI as well as for C. costaricensis population; we computed the asymmetry of the frequency distributions through the coefficient of skewness and the probability density function via the Kernel density estimation. We tested for differences between canopy-dominant tree species and C. costaricensis population structure by the non-parametric Wilcoxon rank sum test. Results: C. costaricensis individuals presented the smallest heights and intermediate DBH sizes as compared with the canopy-dominant species, with statistically significant differences for height but not for DBH according to the Wilcoxon test. Most of the tree fern individuals were located in uneven terrains and over the base slope of the terrain; canopy openness and Total Radiation Under the Canopy values were similar to those reported for Cyathea species elsewhere. Conclusions: We confirm the hypothesis of comparable structure between the canopy-dominant species and the C. costaricensis population only for DBH; on the contrary, for trunk height, there were statistically significant differences; the small heights of C. costaricensis suggest their coexistence in the understory through sheltering from the taller canopy-dominants. Mostly all individuals of C. costaricensis were confined to local environmental conditions, particularly to physiography.

Resumen Introducción: Los helechos arborescentes son componentes importantes de los bosques templados, tropicales y subtropicales, que contribuyen a dar forma a rodales de estructuras complejas. Objetivos: 1) Describir la estructura poblacional de Cyathea costaricensis en un remanente de bosque nuboso del centro-oeste de México; 2) Caracterizar y relacionar la composición florística y la estructura de las especies arbóreas más importantes asociadas a la población de C. costaricensis y; 3) Describir el ambiente donde se encuentra C. costaricensis. Métodos: Estimamos el Índice de Valor de Importancia (IVI) para seleccionar las especies dominantes más importantes del dosel asociadas a C. costaricensis; para las especies seleccionadas según IVI, construimos distribuciones de frecuencia de alturas y diámetros a la altura del pecho (DAP), así como para la población de C. costaricensis. Calculamos la asimetría de las distribuciones de frecuencia a través del coeficiente de asimetría y la función de densidad de probabilidad mediante la estimación de densidad de Kernel. Probamos las diferencias entre las especies de árboles dominantes en el dosel y la estructura de la población de C. costaricensis mediante la prueba no paramétrica de suma de rangos de Wilcoxon. Resultados: los individuos de C. costaricensis presentaron las menores alturas y tamaños intermedios de DAP en comparación con las especies dominantes del dosel, con diferencias estadísticamente significativas para la altura, pero no para el DAP según la prueba de Wilcoxon. La mayoría de los individuos de helechos arborescentes se ubicaron en terrenos irregulares y sobre la pendiente baja del terreno. Los valores de apertura del dosel y Radiación total bajo el dosel fueron similares a los reportados para las especies de Cyathea en otros lugares. Conclusiones: Confirmamos la hipótesis de que hay una estructura similar entre las especies dominantes del dosel y la población de C. costaricensis solo para el DAP; por el contrario, para la altura del fuste, hubo diferencias estadísticamente significativas; las pequeñas alturas de C. costaricensis sugieren su coexistencia en el sotobosque a través de la cobertura árboles dominantes del dosel. La mayoría de los individuos de C. costaricensis fueron encontrados confinados a condiciones ambientales locales, en particular a la fisiografía.

Genetic diversity and structure in natural populations of Cajui from Brazilian Cerrado

Cajui (Anacardium spp.) is a native fruit tree (small cashew) of the Brazilian Cerrado and possesses the potential for commercialization. However, cajui exploitation occurs exclusively through extractivism in the absence of conservation strategies. The lack of conservation strategies may lead to a decrease in genetic diversity of Anacardium. In this work, the genetic diversity and population structure of three natural populations in Sete Cidades National Park (PNSC; PI, Brazil) were assessed using ISSR analysis of 56 cajui accessions and two A. occidentale accessions (outgroup) from Pacajus (CE, Brazil). A total of 112 markers were obtained, 93 (83.04%) of which were polymorphic. The diversity indices of these populations indicated moderate levels of genetic diversity. According to AMOVA, 96.17% of the genetic variability lay within populations, with low genetic differentiation among populations (ΦST = 0.03828). Furthermore, STRUCTURE analysis indicated the existence of four connected genetic groups. The findings show that the individuals from the three collection sites did not represent different subpopulations, likely due to the high gene flow (Nm = 6.7) favored by the floral biology of Anacardium, pollinators and small-animal seed dispersers. This research identifies genetically divergent individuals (C-03, C-05, C-22, C-26, C-34 and C-39), which should be considered priority individuals for conservation and can inform conservation programs for Anacardium spp.

Population structure and ancestry prediction of Aedes aegypti (Diptera: Culicidae) supports a single African origin of Colombian populations

BACKGROUND A previous phylogeographic study revealed two Aedes aegypti African-related mitochondrial lineages distributed in Colombian's cities with different eco-epidemiologic characteristics with regard to dengue virus (DENV). It has been proposed these lineages might indicate independent invasion sources. OBJECTIVES Assessing to Colombian population structure and to support evidence of its probable source origin. METHODS We analysed a total of 267 individuals from cities of Bello, Riohacha and Villavicencio, which 241 were related to the West and East African mitochondrial lineages (termed here as WAL and EAL, respectively). Eight polymorphic microsatellite loci were analysed aiming population structure. FINDINGS Results indicate substantial gene flow among distant and low-connected cities composing a panmictic population with incipient local differentiation of Ae. aegypti is placed in Colombia. Likewise, genetic evidence indicates no significant differences among individuals related to WAL and EAL is placed. MAIN CONCLUSIONS Minimal genetic differentiation in low-connected Ae. aegypti populations of Colombia, and lack concordance between mitochondrial and nuclear genealogies suggest that Colombian Ae. aegypti shared a common demographic history. Under this scenario, we suggest current Ae. aegypti population structure reflects a single origin instead of contemporary migration, which founding populations have a single source from a mitochondrial polymorphic African ancient.

Population structure and diversity assessment of barley (Hordeum vulgare L.) introduction from ICARDA

This study was undertaken to measure the genetic diversity and population structure of 48 barley accessions introduced from ICARDA using 51 polymorphic simple sequence repeat (SSR) markers to select unique parents for breeding. The mean polymorphic information content was 0.491, suggesting high polymorphism for the selected SSR markers among the barley accessions. The population structure indicated a fine genetic base only with two major clusters. All accessions had 100% membership probability in their respective clusters. Analysis of molecular variance revealed that most (78%) of the variation was attributed between populations, while 22% was due to variation among individuals within populations. Neighbour-joining (NJ) tree was constructed using this distance matrix and two major clusters were observed in it. Cluster 1 had all hulled barley accessions and cluster 2 had all hulless barley accessions. Cluster 2 could be further divided into three subclusters. Principal coordinates analysis results were similar to the NJ tree, where the hulled and hulless barley accessions were grouped into separate clusters. This study established the existence of considerable genetic diversity among the 48 tested accessions. The selected genetic resources will be useful for barley breeding in India and other countries.

Evaluation of the Romosinuano cattle population structure in Mexico using pedigree analysis / Evaluación de la estructura poblacional de bovinos Romosinuano en México mediante el análisis de pedigrí / Avaliação da estrutura populacional de bovinos Romosinuano no México usando análise de pedigree

Abstract Background: Romosinuano cattle breed in Mexico has endured isolation and it is necessary to characterize it in order to facilitate sustainable genetic management. Objective: To assess the evolution of the structure and genetic diversity of the Romosinuano breed in Mexico, through pedigree analysis. Methods: Pedigree data was obtained from Asociación Mexicana de Criadores de Ganado Romosinuano y Lechero Tropical (AMCROLET). The ENDOG program (4.8 version) was used to analyze two datasets, one that includes upgrading from F1 animals (UP) and the other with only straight-bred cattle (SP). For both datasets, three reference populations were defined: 1998-2003 (RP1), 2004-2009 (RP2), and 2010-2017 (RP3). The pedigree included 3,432 animals in UP and 1,518 in SP. Demographic parameters were: Generation interval (GI), equivalent number of generations (EG), pedigree completeness index (PCI), and gene flow among herds. Genetic parameters were: Inbreeding (F) and average relatedness (AR) coefficients, effective population size (Nec), effective number of founders and ancestors, and number of founder genome equivalents. Results: The GI varied from 6.10 to 6.54 for UP, and from 6.47 to 7.16 yr for SP. The EG of the UP and SP improved >63% from RP1 to RP3. The PCI increased over time. No nucleus or isolated herds were found. For RP3, F and AR reached 2.08 and 5.12% in the UP, and 2.55 and 5.94% in the SP. For RP3, Nec was 57 in the UP and 45 in the SP. Genetic diversity losses were attributed mainly (>66%) to genetic drift, except for RP3 in the SP (44%). Conclusions: A reduction of the genetic diversity has been occurring after the Romosinuano breed association was established in Mexico, and this is mainly due to random loss of genes.

Resumen Antecedentes: La raza bovina Romosinuano ha estado prácticamente aislada en México y requiere ser caracterizada para un manejo genético sostenible. Objetivo: Evaluar la evolución de la estructura y diversidad genética de la raza Romosinuano en México, mediante el análisis del pedigrí. Métodos: Los datos genealógicos provinieron de la Asociación Mexicana de Criadores de Ganado Romosinuano y Lechero Tropical (AMCROLET). Los análisis se realizaron con el programa ENDOG (versión 4.8) para dos bases de datos, una que incluyó animales en cruzamiento absorbente (UP) a partir de F1 y la otra con sólo animales puros (SP). Para ambas bases de datos se definieron tres poblaciones de referencia: 1998-2003 (RP1), 2004- 2009 (RP2), y 2010-2017 (RP3). El pedigrí incluyó 3.432 animales en la UP y 1.518 en la SP. Los parámetros demográficos fueron: intervalo generacional (GI), número de generaciones equivalentes (EG), índice de completitud del pedigrí (PCI), y flujo de genes entre hatos. Los parámetros genéticos fueron: coeficientes de consanguinidad (F) y de relación genética aditiva (AR), tamaño efectivo de la población (Nec), número efectivo de fundadores y ancestros, y número equivalente de genomas fundadores. Resultados: El GI varió de 6,10 a 6,54 para la UP, y de 6,47 a 7,16 años para la SP. El EG de la UP y la SP mejoró >63%, de RP1 a RP3. El PCI aumentó a través de los años, pero más para la SP que para la UP. No se encontraron hatos núcleo o aislados. Para RP3, F y AR alcanzaron 2,08 y 5,12% en la UP, y 2,55 y 5,94% en la SP. Para RP3, Nec fue 57 en la UP y 45 en la SP. Más de 66% de las pérdidas en diversidad genética se debieron a deriva genética, excepto para RP3 en la UP (44%). Conclusiones: una reducción de la diversidad genética ha estado ocurriendo después de que se formó la asociación de criadores de ganado Romosinuano en México, y es debida principalmente a pérdidas aleatorias de genes.

Resumo Antecedentes: A raça bovina Romosinuano tem estado praticamente isolada no México e precisa ser caracterizada para um manejo genético sustentável. Objetivo: Avaliar a evolução da estrutura e diversidade genética da raça Romosinuano no México, através da análise de pedigree. Métodos: Os dados genealógicos vieram da Asociación Mexicana de Criadores de Ganado Romosinuano y Lechero Tropical (AMCROLET). As análises foram feitas com o programa ENDOG (versão 4.8) para duas bases de dados, uma que incluiu animais em cruzamento absorvente (UP) a partir da F1 e a outra base de dados somente com animais puros (SP). Para ambas bases de dados foram definidas três populações de referência: 1998-2003 (RP1), 2004-2009 (RP2) e 2010-2017 (RP3). O pedigree incluiu 3.432 animais na UP e 1.518 na SP. Os parâmetros demográficos foram: intervalo entre gerações (GI), número de gerações equivalentes (EG), índice de completude do pedigree (PCI), e fluxo de genes entre rebanhos. Os parâmetros genéticos foram: coeficiente de consanguinidade (F) e da relação genética aditiva (AR), tamanho efetivo da população (Nec), número efetivo de fundadores e ancestrais, e número equivalente de genomas fundadores. Resultados: O GI variou de 6,10 a 6,54 para a UP, e de 6,47 a 7,16 anos para a SP. EG da UP e a SP melhorou >63%, de RP1 a RP3. O PCI aumentou ao longo dos anos, mas mais para a SP do que para o UP. Não se encontraram rebanhos núcleo ou isolados. Para RP3, F e AR alcançaram 2,08 e 5,12% na UP, e 2,55 e 5,94% na SP. Para RP3, Nec foi 57 na UP e 45 na SP. Mais de 66% das perdas em diversidade genética foram ocasionadas pela deriva genética, exceto para RP3 no UP (44%). Conclusões: Depois que a associação da raça Romosinuano foi estabelecida no México, tem ocorrido uma redução da diversidade genética, principalmente devido a perdas aleatórias de genes.

Analysis of bacterial community structure and diversity during mountain-agarwood formation / 中国中药杂志

As an important substitute for agarwood, mountain-agarwood, belonging to the family Oleaceae, comes from the root, stem and thick branch of Syringa pinnatifolia, which has a wide range of application in Inner Mongolia, China. It has good clinical efficacy in the use of cardiovascular diseases. However, the formation speed of mountain-agarwood is extremely slow, and its cultivated seedlings have low resin content. Therefore, how to speed up the formation of mountain-agarwood and increase the resin content is a hot research topic in this field. In this work, 16 S rDNA amplicon sequencing method was used to systematically analyze the bacterial communities of different samples of mountain-agarwood. Our data revealed that the samples of mountain-agarwood had more obvious species diversity than the ones of non-mountain-agarwood, especially the wild mountain-agarwood samples. By analysis of bacterial community composition and species abundance, Sphingomonas, Modestobacter and unidentified Cyanobacteria genus were three dominant bacterial genera in all samples. In addition, there are two identified genera of dominant bacteria, namely Actinoplanes and Microbacterium in both wild and cultivated mountain-agarwood, by bacterial community composition and species richness analysis. Meanwhile, Roseomonas was the dominant bacterial genus in both wild and cultivated non-mountain-agarwood samples. Our work could provides basic data for exploring the mechanism of the mountain-agarwood formation, and help to exploit resource of endophytic bacteria reasonably.

Association analysis of phenotypic traits of alkaloid content in Sophora alopecuroides with SSR molecular markers / 中国中药杂志

To further study and fully exploit the medicinal plant Sophora alopecuroides, the molecular markers related with the phenotypic traits of alkaloid content in S. alopecuroides should be detected. In this study, SSR molecular markers were used to analyze the genetic diversity and genetic structure of 23 S. alopecuroides populations, in combination with the association analysis between molecular markers and the alkaloid contents. The results showed that P, H, I, G_(st) and N_m values were 40.10%, 0.335 3, 0.504 5, 0.433 7 and 0.625 9 respectively, in 23 S. alopecuroides populations. This indicated that there was less gene exchange and higher genetic differentiation among different S. alopecuroides populations. The results of SSR unweighted pair-group method with arithmetic means(UPGMA) cluster showed that the S. alopecuroides populations relationship from Xinjiang was far from the populations of other regions, but the populations of S. alopecuroides from Gansu, Inner Mongolia and Qinghai were closely relevant to those from Ningxia. The 23 populations were further divided into 2 genetic subpopulations by the population structure analysis. Through association analysis, a total of 26 loci in 13 SSR markers were found to be significantly associated(P<0.005)with the content of MA, OMA, SC and OSC, and the rate of explanation on the phenotype variance of related markers ranged from 36.45% to 77.93%. Among the locus, 1 each were related with MA and OSC content at interpretation rate reached as high as 50% with high threshold(P<0.000 1). These results could provide support for the discovery of important genes in the alkaloid biosynthetic and metabolic pathway of S. alopecuroides.

Genetic variation and population structure of different geographical populations of Meretrix petechialis based on mitochondrial gene COI

The hard clam (Meretrix petechialis) is a commercially important shellfish in China. To provide valuable insights into management and conservation of M. petechialis, we investigated the genetic variation and population structure of M. petechialis by analysing samples from nine geographical populations. In this study, the genetic diversity and differentiation of nine populations of M. petechialis were assessed using the mitochondrial cytochrome oxidase subunit I (mtCOI) gene. A total of 90 COI sequences were obtained and each COI sequence was 699 bp in length. Fifty-one haplotypes were identified with 10 haplotypes sharedamong populations. The haplotype diversity was highest in Fujian, Panjin and Jiangsu (0.9778 ± 0.0540) and lowest in Dalian (0.7778 ± 0.1374). The nucleotide diversity was highest in Panjin (0.453401 ± 0.240463) and lowest in Jiangsu (0.006213 ± 0.004141). Neutral test (Fu’s Fs) and mismatch distribution analysis revealed that the hard clam experienced a population expansion event. Analysis of molecular variance (AMOVA) indicated that 91.7% of the genetic variance was within populations and 0.52% of the variance was among populations, demonstrating significant genetic differentiation among populations (P < 0.05). The neighbour-joining tree showed that the haplotypes were not clustered according to the geographical location, but some haplotypes from the same or neighbouring locations grouped together. The results obtained in this study provide useful information on the genetic diversity and population structure of M. petechialis and shed light on the management and protection of resources of M. petechialis in the northwestern Pacific.

Candidate screening of blast resistance donors for rice breeding

Rice blast is one of the most serious diseases in the world. The use of resistant cultivars is the most preferred means to control this disease. Resistance often breaks down due to emergence of new races; hence identification of novel resistance donors is indispensable. In this study, a panel of 80 released varieties from National Rice Research Institute, Cuttack was genotyped with 36 molecular markers that were linked to 36 different blast resistance genes, to investigate the varietal genetic diversity and molecular marker-trait association with blast resistance. The polymorphism information content of 36 loci varied from 0.11 to 0.37 with an average of 0.34. The cluster analysis and population structure categorized the 80 National Rice Research Institute released varieties (NRVs) into three major genetic groups. The principal co-ordinate analysis displays the distribution of resistant and moderately resistant NRVs into different groups. Analysis of molecular variance result demonstrated maximum (97%) diversity within populations and minimum (3%) diversity between populations. Among tested markers, two markers (RM7364 and pi21_79-3) corresponding tothe blast resistance genes (Pi56(t) and pi21) were significantly associated and explained a phenotypic variance of 4.9 to 5.1% with the blast resistance. These associated genes could be introgressed through marker-assisted to develop durable blast resistant rice varieties. The selected resistant NRVs could be good donors for the blast resistance in rice crop improvement research.

Genetic structure of Mediterranean fruit fly (Diptera: Tephritidae) populations from Turkey revealed by mitochondrial DNA markers

Ceratitis capitata is one among the most destructive and economically important agricultural pests worldwide. Despite its economic significance, the population structures of this pest have remained relatively unexplored in the eastern Mediterranean basin. Using two mitochondrial markers, the present study aimed to examining the population genetic structure and diversity of C. capitata populations in Turkey, the region that covers a large part of the eastern Mediterranean area. Our results revealed that the Turkish Mediterranean fruit fly populations are characterized by low levels of genetic diversity and limited population differentiation. For comparison purposes, wemerged the sequences identified in the present study with the previously reported sequences from acrossthe world into the data matrix. The haplotype network showed that, unlike the African samples the Mediterranean samples and samples from the new world (America, Pacific region and Australia) did not show any clear pattern of geographical structuring, which indicates that the Mediterranean basin, particularly the eastern Mediterranean region populations, may have played a moreimportant role in the colonization of C. capitata populations to the new world. The results also revealed a close genetic relationship between the Turkish and Iranian populations, suggesting that the Iranian C. capitata populations probably originated from Turkey.

Genetic dissection of grain iron and zinc concentrations in lentil (Lens culinaris Medik.)

Iron (Fe) and zinc (Zn) deficiencies are wide spread in South Asia and Africa. Biofortification of food crops is a viable means of addressing micronutrient deficiencies. Lentil is an important pulse crop that provides affordable source of proteins, minerals, fibre and carbohydrates for micronutrient deficient countries. An association mapping (AM) panel of 96 diverse lentil genotypes fromIndia and Mediterranean region was evaluated for three seasons and genotyped using 80 polymorphic simple-sequence repeat (SSR) markers for identification of the markers associated with grain Fe and Zn concentrations. A Bayesian model based clustering identified five subpopulations, adequately explaining the genetic structure of the AM panel. The linkage disequilibrium (LD) analysis usingmixed linear model (MLM) identified two SSR markers, GLLC106 and GLLC108, associated with grain Fe concentration explaining 17% and 6% phenotypic variation, respectively and three SSR markers (PBALC 364, PBALC 92 and GLLC592) associated with grain Zn concentration, explaining 6%, 8% and 13% phenotypic variation, respectively. The identified SSRs exhibited consistentperformance across three seasons and have potential for utilization in lentil molecular breeding programme.

Life-history traits of Farlowella hahni (Siluriformes, Loricariidae) in streams of the Ivinhema River Basin, Upper Paraná Basin / Traços de história de vida de Farlowella hahni (Siluriformes, Loricariidae) em riachos da Bacia do rio Ivinhema, Bacia do alto Paraná

Abstract Brazilian laws allow the catch of some species as ornamental fish; however, in the absence of biological information, such catch can threaten species conservation. Therefore, this study aimed to offer population and reproductive information about Farlowella hahni in streams of the Ivinhema River Basin, Upper Paraná Basin. To accomplish this, a total of 165 F. hahni individuals were analyzed, including 109 females and 48 males, resulting in an important sex ratio difference from 1:1 (χ 2=19.97; p<0.001), indicating a predominance of females throughout the year. Females reach higher standard length than males. Males presented isometric Length-Weight Relationships, while females have positive allometric growth. Gonadosomatic index presented higher values from October through December. The mean fecundity was 100.3±36.4 of vitellogenic oocytes and was positively correlated with standard length (r=0.51; p=0.01). The data presented herein are the first for this species and suggest a need to carefully manage the F. hahni population, considering its low abundance and fecundity.

Resumo As leis brasileiras permitem a captura de algumas espécies de peixes como ornamentais, no entanto, a ausência de informações biológicas pode tornar esta captura uma ameaça para a conservação destas espécies. Este estudo teve como objetivo oferecer informações populacionais e reprodutivas sobre Farlowella hahni em riachos da Bacia do rio Ivinhema, bacia do Alto Paraná. Um total de 165 indivíduos de F. hahni foi analisado, sendo 109 fêmeas e 48 machos. A proporção de sexo foi diferente de 1:1 (χ2=19,97; p<0,001), com predominância de fêmeas ao longo do ano. As fêmeas atingiram maior comprimento padrão do que os machos. Os machos apresentaram crescimento isométrico e as fêmeas crescimento alométrico positivo. O índice gonadossomático apresentou maiores valores de Outubro a Dezembro. A fecundidade média foi de 100,3±36,4 de ovócitos vitelogênicos e foi correlacionada positivamente com o comprimento padrão (r=0,51; p=0,01). Os dados apresentados são os primeiros para essa espécie e sugerem a necessidade de cuidados no manejo da população de F. hahni considerando baixa abundância e fecundidade.

Growth parameters of the invasive gastropod Melanoides tuberculata (Müller, 1774) (Gastropoda, Thiaridae) in a semiarid region, Northeastern Brazil

Melanoides tuberculata has invaded several aquatic ecosystems in the Neotropical region. This species shows high adaptive capacity and plasticity, establishing itself in several basins, promoting negative impacts on environments and native species. Here, we determine the growth parameters and the population structure of this species, in a semi-arid environment, in Northeast Brazil (Pernambuco state). Monthly captures were conducted at three types of substrate: site 1: soft bottom with macrophytes, site 2: soft bottom without macrophytes, and site 3: gravel and rocks. Shells were classified as occupied or empty, and their shell length (SL) and opening width (SW) were measured. The growth parameters of the von Bertalanffy’s model were estimated from the size-length frequency distribution using the ELEFAN I. Also, the maturity was verified, through the size at onset of maturity (SOM - 14.85 mm SL) proposed in the literature. A total of 1,013 individuals were collected, with shells varying from 7 to 39 mm SL and mean density of 84.42 (± 3.86) individuals m-2. The substrate with the largest number of mollusks was the site 1. Largest amount of empty shells was detected at site 3. Growth of M. tuberculata indicates rapid increment, with k = 0.56, L∞ = 42 mm and t0 = -0.26 years. The mean estimated age for the species was 0.95 years. According to the SOM, 86% of individuals sampled were considered mature.

Abundance and population structure of Plesionika narval (Fabricius, 1787) in the Northeastern Atlantic / Abundância e estrutura populacional de Plesionika narval (Fabricius, 1787) no Atlântico Nordeste

Abstract Analysis of abundance and population structure of Plesionika narval was performed on data concerning 5,255 specimens obtained from 62 fishing sets carried out off the Madeira archipelago (Northeastern Atlantic) between 2004 and 2008 in a depth range from 101 to 350 m. Abundance ranged from 0.01 to 19.74 specimens-per-trap and significant differences were found between seasons, probably as a result of an increment of population in the spring during the recruitment season. The analysis of size distribution revealed that the carapace length (CL) ranged from 2.45 to 28.61 mm and that mean female size consistently exceeded that of males. Differences in mean CL were statistically significant between depth strata and seasons. Of the specimens sampled, 57.00% were males, 41.88% females and 1.42% undetermined. Sex ratio also differed significantly between seasons according to depth strata, consolidating the hypothesis of the existence of seasonal migrations related with the reproductive cycle of this species. Ovigerous females showed larger sizes and occurred all year around and remain in shallow waters in winter, summer and autumn and move to deeper waters in spring. The highest frequency of ovigerous females was recorded in summer, between 151 and 200 m deep supporting the hypothesis that spawning of this species occurs in shallow waters, especially in late summer.

Resumo O estudo de abundância e dinâmica populacional de Plesionika narval foi efetuado com 5.255 espécimes provenientes de 62 lances de pesca realizados ao largo do arquipélago da Madeira (Atlântico Nordeste) de 2004 a 2008 entre 101 e 350 m de profundidade. A abundância oscilou entre 0,01 e 19,74 espécimes-por-armadilha com diferenças significativas entre estações provavelmente devido ao aumento da população na primavera durante o período de recrutamento. A análise da distribuição de tamanhos revelou que o comprimento da carapaça (CL) variou entre 2,45 e 28,61 mm e que o tamanho médio das fêmeas excedeu o dos machos. Verificaram-se diferenças significativas no CL médio entre estrato de profundidade e estação. Do total amostrado, 57,00% foram machos, 41,88% fêmeas e 1,42% indeterminados. A razão de sexos também diferiu significativamente entre estações de acordo com a profundidade, consolidando a hipótese da existência de migrações sazonais relacionadas com o ciclo reprodutivo desta espécie. As fêmeas ovadas apresentaram maiores tamanhos e ocorreram durante todo o ano permanecendo em águas pouco profundas no inverno, verão e outono e migrando para águas profundas na primavera. A maior frequência de fêmeas ovadas foi registada no verão, entre 151 e 200 m de profundidade reforçando a hipótese de que a desova desta espécie ocorre em águas menos profundas, especialmente no final do verão.

Geographic distribution of genetic variation of natural populations in an endangered and rarely herb Notopterygium forbesii var. oviforme / 中草药

Objective: In order to determine the geographic distribution of genetic variation and structure of natural populations in an endangered and rarely medicinal herb Notopterygium forbesii var. oviforme. Methods The primers of polymorphic microsatellite molecular markers of N. forbesii var. oviforme were firstly developed using the next generation reduced-representation sequencing technology. Then, the genetic polymorphisms of the whole geographical distributional population samples of N. forbesii var. oviforme were investigated based on the polymorphic SSRs. Results:A total of 780 SSR-containing DNA sequences were obtained by genome De novo assembly. Ten pairs of polymorphic SSR primers were developed and used to analyze the genetic variability of 105 individuals from six natural populations that covered the entire geographical distributions of N. forbesii var. oviforme. The results showed that the number of observed alleles (No) per locus varied between 1 and 6 (mean = 3.530). The mean observed heterozygosity (Ho) per population ranged from 0.305 to 0.457. These finds suggested that N. forbesii var. oviforme had the moderate to high level of genetic variability. Bayesian clustering analyses demonstrated that the six natural populations of N. forbesii var. oviforme have formed two clear genetic lineages. The gene flow and/or genetic introgression have occurred between these two groups. Conclusion:The next generation reduced-representation sequencing technology largely enriched SSRs database of N. forbesii var. oviforme. The geographic distribution patterns of genetic variations of N. forbesii var. oviforme may be related to the long evolutionary history of species and pollen dispersal of long distance among different natural populations.

Genetic variation and genetic structure of Caranx hippos (Teleostei: Carangidae) in the Colombian Caribbean / Variación y estructura genética de Caranx hippos(Teleostei: Carangidae) en el Caribe de Colombia

Abstract The crevalle jack Caranx hippos, has a wide distribution in the Western Atlantic, becoming one of the most economically important species in the artisanal fishing industry in Colombia. However, little is known about its biology. The present study aimed to evaluate the variation and genetic structure of C. Hippos in the Colombian Caribbean by analyzing the mitochondrial DNA region control and cytochrome oxidase subunit (COI). We sequenced the DNA of 153 muscle samples collected from specimens obtained from six fishing ports. The results showed 21 haplotypes for COI and 116 haplotypes for the control region, divided into two lineages that do not exhibit a pattern of geographical distribution. For mitochondrial control region, the estimated haplotype diversity (Hd) presented relatively high values (Hd= 0.99 and = 0.1), while for COI results were Hd = 0.68 and = 0.01; the relationship between haplotype and nucleotide diversity and the neutrality test revealed that C. Hippos experienced bottlenecking and a subsequent rapid population expansion. Estimates of genetic structure were low and insignificant, indicating no differentiation between samples collected from geographical isolation. This suggests that for the Colombian Caribbean there is a panmictic population of C. hippos. However, variations were found at population levels, especially in La Guajira, Turbo and San Antero, which, when compared to those included for Brazil and México, demonstrated that unique haplotypes in La Guajira are more aligned to the Brazilian populations, by means of the influence of the Caribbean Current, whilst those from Turbo and San Antero are more frequent in haplotypes originating from Mexico. Future studies should focus the understanding of these processes. Rev. Biol. Trop. 66(1): 122-135. Epub 2018 March 01.

Resumen El jurelCaranx hipposes considerado una de las principales especies objeto de la pesquería artesanal en aguas colombianas; sin embargo, es poco lo que se conoce respecto a su estructura poblacional. El presente estudio propuso evaluar la variación y estructura genética en el Caribe colombiano a partir del análisis de la región control y la subunidad citocromo oxidasa I (COI) del ADN mitocondrial. Secuenciamos el ADN de 153 muestras de músculo recolectadas de ejemplares desembarcados en seis puertos pesqueros. Los resultados mostraron 21 haplotipos para COI y 116 haplotipos para la región control, distribuidos en dos linajes que no presentan un patrón de distribución geográfica. Para la región control la diversidad genética fue alta (Hd=0.99 y π = 0.1), mientras que para COI los resultados fueron Hd=0.68 y π =0.01, esto mostró que probablemente C. hipos pasó por un evento que provocó la disminución drástica de la población y posteriormente tuvo un crecimiento rápido. Las estimaciones del grado de estructuración genética fueron bajas y poco significativas indicando la ausencia de diferenciación entre las muestras recolectadas a partir de un aislamiento geográfico, esto sugiere que la población de C. hipos es panmictica; sin embargo, se hallaron variaciones a nivel intrapoblacional especialmente en La Guajira, Turbo y San Antero, los cuales al ser comparados con los haplotipos incluidos de Brasil y México se encontró que el único haplotipo hallado en La Guajira está alineado con el de Brasil, facilitado probablemente por la corriente del Caribe, mientras que los de Turbo y San Antero con los de México.

Trend and Structure of Populations of Balanites aegyptiaca in Parkland Agroforestsin Western Niger

Current and future trends of the parklands and the population of Balanites aegyptiaca in western Niger were investigated through the analysis of the diversity, the regeneration status and the size class distributions of the woody plants. A total of 21 plots, measuring 2500 m2 (50 m x 50 m) each were randomly selected to represent the parklands of B. aegyptiaca in the study area. Across all plots 1180 individual plants were recorded, representing 13 species, 10 genera and 7 families. The most diverse family is Fabaceae and the most dominant family is Balanitaceae represented by only one species B. aegyptiaca. The density of the regeneration was 71.16 and 33.31 plants ha-1 for the entire parkland and the population of Balanites aegyptiaca, respectively, while the diversity and the evenness indices of B. aegyptiaca were 2.52 and 0.24, respectively. B. aegyptica, Faidherbia albida, Hyphaene thebeica and Acacia nilotica populations had the highest values for the importance value index (IVI). Results from the analysis of the size class distribution indicate that the parklands and the population of B. aegyptiaca appear to be healthy and stable with high regeneration rates. However, low recruitment of juveniles to adults was observed due to seedling and sapling mortality, and high disturbance regimes, which in the long term can affect the population turnover.Acacia tortilis, A. senegal, Azadirachta indica and Prosopis juliflora populations had the lowest IVI values and may be the most sensitive to the disturbance regimes in the study area. Therefore, we suggest designing and implementing a conservation programme in the study area, which will protect and facilitate the growth of the juveniles of both overexploited and underexploited populations.

Genetic diversity of 6 species in Polygonatum by SSR marker / 中国中药杂志

Polygonatum is a genus of the perennial herb family Liliaceae, with great potential in food, medicine and other field. In this study, genetic diversity and cluster structure analysis of 6 species in Polygonatum were investigated the molecular marker technique of simple sequence repeat (SSR). A total of 49 SSR makers were used to study genetic diversity and population structure within 60 germplasm resources which obtained from 38 counties and cities in 14 provinces of China. A total of 211 alleles were identified and the number of alleles ranged from 2 to 10, with an average of 4.306 1 alleles per SSR. The range of polymorphism information content (PIC) varied from 0.731 8 to 0.031 7, with the average of 0.309 6. The cluster analysis classified 60 germplasm resources into four defined groups at the genetic distance value of 0.26, among which most species with relatives were clustered into the same group. Extraordinarily, there were 6 germplasm resources clustered into other species, indicating that the classification of inter-genus and geographical distribution was crossed in Polygonatum. The genetic diversity index of the 4 geographical populations from high to low was: Western region, Central China, Southern China, Eastern China. The population structure analysis, also indicating divided the entire collection into four groups, which was similar to the assignment pattern of cluster structure analysis. These results suggested that the Polygonatum germplasm resources used in this study is rich in relatively high genetic diversity with large variation range, relatively fuzzy boundaries of species. It appeared the phenomenon that there is a difference decreases between the alternate leaf system and the rotation leaf system. The genetic diversity in the western region was higher than that in other regions, and the western region may be the origin center of the genus Polygonatum.

Signatures of Selection From Candidate Gene Polymorphisms Panel in Five Zebu Breeds

ABSTRACT The signals of selection using candidate genes polymorphism were studied in five zebu breeds of Mexico. Three loci from GHRH and complementarily Steroyl Co Desaturase F762, Dopamine Beta Hydroxilase 17299, and LEP3272 were identified under selection. Findings depict Zebu selection pressure mainly on Brahman breed resulting in a divergent structure pattern.